How We're Different: Our A.I.

Let's start from the beginning. At its heart, Jona is an AI company. So why are we applying AI to the microbiome?


Biology is becoming increasingly data-driven, with advancements spanning from protein modeling and drug discovery to multi-omics. These technologies leverage vast amounts of data to unlock insights into the complexities of biological systems. The gut microbiome is especially complex with the huge variety of different organisms, immense amounts of DNA and the rapidly growing scientific literature. Here are some reasons why:

Written by

Jona Team

Reviewed by

Leo Grady

4 min

Read time

How We're Different: Our A.I.
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microbiome
Science

#1: The Volume of Information is Growing

The medical research database PubMed registers more than 2,000 new studies per month related to the microbiome. No human can keep up with this number of new insights, and the microbiome field is particularly active. For comparison, PubMed registered only 142 studies per month in 2023 on polycystic ovary syndrome, and only about 92 studies per month on irritable bowel syndrome in the same period.On one hand, all of this new research provides a wealth of data and insights on the microbiome; on the other, it creates an overwhelming amount of information that is difficult for anyone to sift through manually. 

AI algorithms excel at handling large datasets. By employing natural language processing (NLP) and machine learning techniques, Jona’s AI can scan and analyze vast amounts of microbiome literature in a fraction of the time it would take a person to read these papers, much less link them together.

#2: Signal-to-Noise Ratio and Data Quality is Critical

In any data-driven field, distinguishing meaningful signals from background noise is crucial. The gut microbiome is no exception, where variations in microbial populations can be influenced by numerous factors, including diet, lifestyle, and genetics. Ensuring high data quality and accurately interpreting these variations is essential for providing reliable insights.

Jona partners with an expert lab to conduct metagenomic shotgun sequencing, a data method that looks at the entire scope of what’s in your gut - viruses, bacteria, fungi, protists, and more. Unlike 16S tests which can analyze only surface level bacteria (ignoring fungus and other aspects of your microbiome), metagenomic shotgun sequencing identifies strain-level organisms across bacteria, fungus, viruses, protists, pathogens, parasites and more on which we can utilize our AI engine.

In leveraging scientific studies to analyze microbiome data, Jona’s AI weighs each study based on the strength and consistency of the evidence to focus on the most significant findings.This enhances the accuracy and reliability of our microbiome analysis, ensuring that each analysis is performed using trustworthy, evidence-based and actionable information.

#3: Your Report Should Evolve with the Science

Static reports can quickly become outdated, limiting their usefulness. If you took a Jona test last week, and there is a breakthrough in the research this week, we still want you to benefit from that new information. 

AI enables our reports to evolve with science. By continuously integrating new research findings, our AI-powered analysis can update its models and insights in real-time. You may log into your report weeks or months from now and see that your associations have changed. Even though we’re working from the original stool sample, its implications for health and disease may have changed. For the most up-to-date results, you’ll want to retest every three to six months so we can sync our research updates with any changes in your body.

Our Own Large Language Model

As a company, we have developed a proprietary large language model (LLM), which we use to develop our personalized interactive reports for customers. This “in-house” developed AI has thousands of peer-reviewed medical papers stored in its database. With access to this wealth of information, not only can we find associations between your microbiome and diseases, conditions, symptoms, but also continually improve our capabilities and knowledge base thanks to our generative AI technology.

Our Digital Twin Technology

Our system creates a “digital twin” for each individual user, used to simulate the impact that various foods, diets, lifestyle changes, and nutrients have on your gut microbiome. This can help inform which diet, supplements, and recommendations can improve your gut.

Action Plan Generation

Using insights generated from your microbiome analysis, our AI can generate a personalized action plan to meet your specific gut needs. For instance, if you have low levels of a particular microbe that should be abundant in your body for optimal health, Jona can provide recommendations on specific diet or lifestyle changes to help increase the concentration of that microbe to a healthy level.

Conclusion

Jona leverages AI to navigate the vast and complex microbiome literature, uncover disease associations, improve data quality, and ensure that our reports evolve with the latest scientific advancements. We’re confident that this approach brings meaning and clarity in helping you understand your gut microbiome.

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